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Post by Apostolos Dimitromanolakis on Nov 6, 2017 22:41:12 GMT
1) Download an example VCF file from 1000 genomes, including 47 individuals and 169413 markers, here: 2) Download the truffle binary found at the download link: adimitromanolakis.github.io/truffle/download.htmlfs-and-po-pairs-from-1000genomes.vcf.gz 3) Obtain IBD1/2 estimates and list of segments for this example file by running the following command: ./truffle --vcf fs-and-po-pairs-from-1000genomes.vcf.gz --segments
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