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Post by cnavery on Jun 20, 2019 16:29:52 GMT
Hi there,
I've just successfully run TRUFFLE on a cohort of 39 distantly related individuals. I was curious about the .segments output given that the variant start and end positions do not seem to correspond with the total length. I was also confused by "POS Mbp".
Could I get any further explanation as to how I can best investigate the regions that were identified in this output file?
Thanks!
Cecile
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Post by apostolis on Oct 10, 2019 0:27:50 GMT
Yes the output format can be a bit confusing and we will improve it in the next version.
The POS corresponds to the start position of the segment in mega base pairs.
the LENGTH corresponds to the length of the segment, not the end position.
Please disregard the MBp columns.
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