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Post by oiiio on Sept 16, 2019 22:53:42 GMT
Is it possible to run the program using a GVCF file, even if only variants are taken into account?
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Post by apostolis on Oct 10, 2019 0:22:29 GMT
Hi yes, it is possible, since truffle already has a minor allele frequency filter (command line option --maf 0.02 for example).
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